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Thursday, May 29, 2008

lalalalalala

paham ngak kamu2..
pening tol nk susun sume dataset ni..
try n error jek..
langgar dinding baper kali dah ni..
hhuuhuhuh..
ni la software yg me gune utk analisis..skrg ni tgh susun dataset manually..waaa, penat giler..

n..ade 180 seq X 2 gene= 360 dataset yg kna susun manually..

anyone wanna help me..raise ur hand please!

here it goes.. (sigh)

the question is:
How do I combine different data set into a single NEXUS file?

In the example below protein and nucleotides are combined in a single interleaved data set. Notice that a character partition is used to distinguish the data sets.

#NEXUS
Begin data;
Dimensions ntax=5 nchar=20;
Format datatype=protein interleave symbols="ACGT" gap=-;
Matrix
t1 VKYPNTNEEG
t2 VKYPNTNEEG
t3 VKYPNTNEEG
t4 VKYPNTNEDG
t5 VKYPNTNEDG


t1 AGCTAAACCT
t2 AGCTAGACCT
t3 AGCTAGACTT
t4 AGCTAGACTT
t5 AGCTAAACTT
;
end;


Begin Assumptions;
charset protein = 1-10;
charset dna = 10-.;



usertype 5_1 stepmatrix = 4 acgt
- 5 1 5
5 - 5 1
1 5 - 5
5 1 5 -
;
end;


Begin paup;
outgroup t2 t3;
ctype 5_1:dna;
hsearch addseq=random;
end;

back to work!

3 corat-coret:

Ziana said...

aler
x dapek nk nolong

timah said...

huh huh....ape ni?tak paham pun....tak penah blaja pun....

Lily.Lulu. said...

errr .. tatau la.
pening pale tgk
:)

You Are a Realist
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You never try to make a bad situation seem better than it is...
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